What Your Gut Is Trying to Tell You: A Deep Dive Into Your Digestive System
- Jennifer Bray
- Nov 9, 2024
- 9 min read

Your digestive system is more than just processing food. Each organ affects your physical health, emotional wellbeing, and even your immune function. When these organs aren't working well, they send signals that we often miss or don't understand. Let's talk about each part of your digestive system, what it does, and how it communicates with you.
The Brain
Digestion actually starts in your brain, not in your mouth. When you see, smell, or even think about food, your brain starts preparing your digestive system for what's coming. Your brain and gut are constantly talking to each other through something called the gut-brain axis. This is why you get "butterflies" when you're nervous or lose your appetite when stressed. The vagus nerve connects your brain directly to your gut, sending messages back and forth all day long.
When your brain-gut connection is working well, you'll likely have clear thinking, stable moods, and good intuition. But when this connection isn't working right, you might experience brain fog, mood changes, anxiety, or sleep problems. This is why taking care of your gut health is so important for mental wellbeing.
The messages between your brain and gut affect your entire digestive process. Your brain tells your gut when to produce digestive enzymes, when to move food through your system, and even how hungry or full you feel. And your gut sends information back to your brain about nutrient levels, stress, and whether something you ate might be harmful.
The Mouth
Your mouth does more than just chewing food. When you take a bite, your saliva immediately starts breaking down carbohydrates with enzymes. Your saliva also contains compounds that protect your teeth and fight harmful bacteria.
The way you chew and how long you chew matters. When you chew well, you're helping your entire digestive system work better. Poor chewing can lead to digestive issues later because your stomach and intestines have to work harder to break down larger pieces of food.
The taste of food on your tongue sends signals to your brain about what type of food is coming. This allows your brain to prepare the rest of your digestive system with the right enzymes and chemicals needed to break down that specific type of food.
The Stomach
Your stomach is a powerful organ that does several important jobs. It produces hydrochloric acid (HCl) which not only helps break down proteins but also kills harmful bacteria that might be in your food. When your stomach is working well, it produces just the right amount of acid - not too much and not too little.
The acid in your stomach also helps activate enzymes that break down proteins into smaller pieces. Another crucial job of your stomach is producing something called intrinsic factor, which helps your body absorb vitamin B12. Without enough intrinsic factor, you could develop B12 deficiency even if you're eating plenty of B12-rich foods.
Your stomach also acts like a mixer, churning food with acid and enzymes to create what's called chyme. This process needs to happen at just the right pace. If it's too fast or too slow, you might experience digestive issues like reflux, bloating, or feeling full for too long after meals.
The Gallbladder
Fun facts about the gallbladder - when it's healthy, you're more likely to have good judgment, be decisive, and have courage. When your gallbladder isn't working well, you might feel timid, fearful, or have low self-esteem. It can even affect whether you get motion sickness.
When you eat, there's a whole process that happens. Your stomach releases acid, which triggers cholecystokinin (a hormone peptide) from your small intestine. This is important because it tells your pancreas to release digestive enzymes and signals your gallbladder to release bile for proper digestion. It also helps you feel full after eating.
Bile is really interesting - it's 95% water, but that water contains dissolved electrolytes (sodium, bicarbonate, chloride, potassium, magnesium), amino acids (glutamic acid, cysteine), glutathione, bile acids, bilirubin, cholesterol, steroids, vitamins, enzymes, porphyrins, heavy metals, drugs, and environmental toxins.
Your gallbladder does several important jobs:
- Stores bile
- Uses bile salts to break down fats and help absorb them
- Helps regulate thyroid hormones by converting T4 to T3
- Produces secretory IgA and inflammatory cytokines to fight bacteria and infections
- Has antimicrobial properties
- Helps develop the intestine
- Helps absorb vitamin D through bile
Bile salts are particularly important because they:
- Break down larger fat globules into smaller ones
- Help regulate lipids, carbohydrates, and metabolism
- Trigger anti-inflammatory processes to prevent bacterial overgrowth
- Help with normal intestinal movement
- Support the entire mucosal system
The Liver
Your liver does an incredible amount of work every single day. While most people know it helps with detoxification, they don't realize it has over 500 different functions in your body. One of its main jobs is producing bile - about a quart of it every day. This bile needs to flow freely for your liver to work properly.
The liver is constantly filtering your blood and processing both helpful and harmful substances. Think about this - every time you eat, breathe, or absorb something through your skin, your liver has to process it. It's like having a sophisticated recycling center that sorts out what to keep, what to change, and what to remove from your body.
When it comes to digestion, your liver processes nutrients from your food after they're absorbed in your small intestine. It stores some vitamins and minerals for later use, helps regulate blood sugar, and produces cholesterol - which, contrary to what many think, is actually essential for your health when in the right amounts.
Your liver also helps with:
- Processing and storing iron from food
- Making proteins needed for blood clotting
- Converting excess glucose to glycogen for storage
- Breaking down hormones once they've done their job
- Producing proteins for immune system function
- Converting thyroid hormone T4 to the active form T3
The Pancreas
Your pancreas might be small, but it's incredibly important for both digestion and blood sugar control. It produces powerful digestive enzymes that break down proteins, fats, and carbohydrates. Without these enzymes, you couldn't get nutrients from your food, no matter how healthy your diet is.
The pancreas releases different types of enzymes depending on what you eat:
- Protease for breaking down proteins
- Lipase for breaking down fats
- Amylase for breaking down carbohydrates
Besides making digestive enzymes, your pancreas also produces sodium bicarbonate. This helps neutralize stomach acid as it enters your small intestine. Without this neutralization, the acid could damage your intestinal lining.
Your pancreas also makes insulin and glucagon - hormones that regulate your blood sugar levels. These hormones work together like a thermostat for your blood sugar, keeping it in the right range. When this system isn't working well, you might experience energy crashes, mood swings, or even develop blood sugar disorders.
The Small Intestine
Your small intestine is where most of your nutrient absorption takes place. While it's called "small," it actually has a surface area about the size of a tennis court when you count all its folds and tiny finger-like projections called villi.
The small intestine doesn't just passively absorb nutrients - it's actually quite selective about what it lets through. The cells lining your small intestine act like security guards, deciding what gets absorbed into your bloodstream and what should be kept out.
This is also where your microbiome really starts to play a major role in your health. The bacteria in your small intestine help:
- Break down foods further
- Produce certain vitamins
- Support your immune system
- Communicate with other organs
- Influence your mood and energy levels
When your small intestine isn't working well, you might experience:
- Bloating and gas
- Nutrient deficiencies even with a good diet
- Food sensitivities
- Changes in energy levels
- Skin problems
- Immune system issues
The Colon
Your colon, or large intestine, is home to the largest population of beneficial bacteria in your body. These bacteria do much more than help with bowel movements - they're actually crucial for your overall health.
In your colon:
- Water and minerals are absorbed back into your body
- Fiber is fermented by bacteria to produce beneficial compounds
- Certain vitamins are produced, especially vitamin K
- Important immune cells monitor for threats
- Short-chain fatty acids are produced, which feed your colon cells
Your colon is also highly influenced by your emotions and stress levels. This is why stress can cause digestive issues like diarrhea or constipation. The bacteria in your colon even produce neurotransmitters that affect your mood and stress response.
The health of your colon affects:
- Your immune system function
- Inflammation levels throughout your body
- hormone balance
- Mental health
- Skin health
- Energy levels
How These Organs Work Together
All these organs need to work together for proper digestion. If one isn't functioning well, it affects all the others. For example, if your gallbladder isn't releasing enough bile, you might not just have trouble digesting fats - you could also have issues with:
- Thyroid function (since bile helps with hormone conversion)
- Detoxification (since toxins are removed through bile)
- Gut bacteria balance (since bile helps control bacterial growth)
- Nutrient absorption (especially fat-soluble vitamins A, D, E, and K)
This is why it's so important to support your entire digestive system, not just focus on one organ when you're having issues. Small changes in diet, stress management, and lifestyle can have big effects on your overall digestive health.
Common Signs Your Digestive System Needs Support
Your body is constantly sending signals about how well your digestive system is working. Understanding these signals helps you know when and where you might need extra support. Let's look at what different symptoms might be telling you about each part of your digestive system.
When the brain-gut connection isn't working well, you might find yourself feeling anxious about eating or experiencing strong food cravings. Brain fog after meals is common, and you might have trouble knowing when you're full. Many people also notice their digestive issues get worse during stressful times, and they often struggle with sleep problems alongside their digestive concerns.
Problems with upper digestion often show up in unexpected ways. You might notice bad breath that won't go away or a white coating on your tongue can indicate that digestion isn't starting properly in your mouth. Food might feel like it's sitting heavy in your stomach or stuck in your throat.
Stomach function issues typically manifest as feeling overly full after eating small amounts of food, or bloating right after meals. You might find yourself burping frequently during or after eating, or experiencing nausea, especially in the morning. Some people notice heartburn or indigestion, which can indicate there is not enough stomach acid to help break down the foods you are eating.
Gallbladder and bile flow problems often show up as pain or tenderness in your right upper abdomen. You might notice you can't handle fatty foods well, or you get headaches after eating them. Itchy skin, especially on your palms, can be a surprising signal of gallbladder issues. Light-colored or floating stools are also common signs that fats aren't being properly broken down. Many people with gallbladder problems also report trouble concentrating or a bitter taste in their mouth.
When your liver needs support, you might notice yourself regularly waking up between 1-3 AM. Weight loss might become more difficult, and you could develop skin breakouts or hormone imbalances. Chemical sensitivities, trouble handling alcohol, spider veins, and easy bruising are all signs your liver might need some extra care.
Pancreatic function issues often appear as bloating specifically around your belly button area. You might experience sugar cravings after meals or energy crashes after eating. Feeling sleepy after meals and dealing with chronic inflammation can also point to pancreatic stress. Sometimes undigested food in your stool can indicate that pancreatic enzymes aren't doing their job properly.
Small intestine issues typically show up a few hours after eating, often as bloating or joint pain related to certain foods. You might develop skin problems or find yourself becoming sensitive to foods you used to handle well. Even with a good diet, you could develop nutrient deficiencies. Seasonal allergies might become more pronounced when your small intestine is struggling.
Colon issues usually manifest as changes in your bowel movements or pain in your lower abdomen. You might notice more gas and bloating at the end of the day, or feel like you're never quite emptying your bowels completely. The mucus in your stool or alternating between constipation and diarrhea can indicate your colon needs support.
When multiple parts of your digestive system need attention, you might experience a range of seemingly unrelated symptoms. Food sensitivities might seem to multiply over time, or you might develop skin issues that don't respond to topical treatments. Fatigue after eating, multiple nutrient deficiencies, hormone imbalances, and autoimmune conditions can all be connected to digestive system dysfunction. Even unexplained weight changes despite maintaining your usual diet can point to digestive issues.
Remember that these symptoms are your body's way of communicating that your digestive system needs support. Think of them as your body's check engine light - a signal that something needs attention, not necessarily a sign of serious problems. Many digestive issues improve with simple changes: taking time to chew your food properly, staying hydrated between meals, managing stress, moving regularly, getting enough sleep, and eating in a relaxed state at regular times.
If you're experiencing multiple symptoms, working with a practitioner who understands the complexity of the digestive system can be incredibly helpful. They can help identify which areas need the most support and create a plan that addresses not just your symptoms but their underlying causes. Your digestive health influences every aspect of your wellbeing - from your energy and immune system to your emotional health. Taking care of your digestive system means taking care of your whole self.
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